Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
159
total RNA-seq
3
ATAC-seq
3
small RNA-seq
Assay category
317
DNA binding
162
Transcription
3
DNA accessibility
Target of assay
254
transcription factor
81
recombinant protein
59
histone modification
58
histone
48
RNA binding protein
37
narrow histone mark
21
broad histone mark
17
chromatin remodeller
1
control
1
other context
1
other post-translational modification
Date released
173
November, 2017
162
May, 2020
50
December, 2017
48
November, 2018
19
August, 2017
8
October, 2019
7
July, 2019
5
December, 2019
5
January, 2019
3
August, 2021
1
February, 2021
1
March, 2020
Available data
532
bam
529
bigWig
368
bed narrowPeak
343
fastq
326
bigBed narrowPeak
162
tsv
bed broadPeak
49
bigBed broadPeak
32
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
bigBed bedMethyl
Organism
482
Homo sapiens
Biosample type
236
tissue
223
cell line
14
in vitro differentiated cells
9
primary cell
Organ
617
pancreas
555
connective tissue
481
liver
420
adipose tissue
274
epithelium
230
heart
175
blood vessel
175
vasculature
171
brain
127
kidney
124
artery
66
bone element
59
limb
54
blood
54
bodily fluid
29
embryo
29
nerve
19
musculature of body
13
spleen
10
vein
8
skeleton
2
eye
1
pericardium
1
pituitary gland
Project
482
AMP
Genome assembly (visualization)
561
hg19
482
GRCh38
Lab
482
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
6
inconsistent control run_type
files.file_type!
bed broadPeak
bigBed bedMethyl
BIOSAMPLE
ASSAY
482 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
tissue
liver
75
147
1
right lobe of liver
7
2
1
2
pituitary gland
1
cell line
HepG2
217
5
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
Liver fetal (hepatocyte)
1
Download