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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
58
total RNA-seq
46
ATAC-seq
1
WGBS
Assay category
67
DNA binding
58
Transcription
46
DNA accessibility
1
DNA methylation
Target of assay
64
histone
64
histone modification
41
broad histone mark
23
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
60
February, 2021
39
May, 2019
35
February, 2023
29
October, 2019
8
July, 2019
1
March, 2020
Available data
152
bam
144
bigWig
128
bed narrowPeak
78
bigBed narrowPeak
58
tsv
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
tagAlign
2
fastq
1
bed bedMethyl
1
bigBed bedMethyl
Organism
172
Homo sapiens
Biosample type
100
tissue
60
cell line
12
primary cell
Organ
619
pancreas
557
connective tissue
459
liver
422
adipose tissue
269
epithelium
232
heart
172
blood vessel
172
vasculature
127
kidney
120
artery
97
brain
66
bone element
60
limb
54
blood
54
bodily fluid
29
embryo
29
nerve
20
musculature of body
12
spleen
10
vein
8
skeleton
2
eye
1
pericardium
Project
172
AMP
Genome assembly (visualization)
172
GRCh38
143
hg19
Lab
172
AMP-T2D consortium
files.file_type!
bed broadPeak
tagAlign
target.investigated_as!
other context
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
tissue
coronary artery
3
36
tibial artery
18
1
thoracic aorta
12
2
1
ascending aorta
13
1
aorta
11
1
1
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of umbilical vein
10
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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