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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
316
ChIP-seq
159
total RNA-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
316
DNA binding
162
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
254
transcription factor
81
recombinant protein
58
histone modification
57
histone
48
RNA binding protein
36
narrow histone mark
21
broad histone mark
17
chromatin remodeller
1
control
1
other context
1
other post-translational modification
Date released
173
November, 2017
162
May, 2020
50
December, 2017
49
November, 2018
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
1
February, 2021
1
March, 2020
Available data
531
bam
528
bigWig
367
bed narrowPeak
343
fastq
326
bigBed narrowPeak
162
tsv
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
482
Homo sapiens
Biosample type
235
tissue
224
cell line
14
in vitro differentiated cells
9
primary cell
Organ
578
pancreas
556
connective tissue
482
liver
422
adipose tissue
265
epithelium
233
heart
176
blood vessel
176
vasculature
171
brain
127
kidney
124
artery
66
bone element
60
limb
54
blood
54
bodily fluid
29
nerve
27
embryo
20
musculature of body
15
spleen
10
vein
8
skeleton
2
eye
1
pericardium
1
pituitary gland
Project
482
AMP
Genome assembly (visualization)
562
hg19
482
GRCh38
Lab
482
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
6
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
May, 2021
BIOSAMPLE
ASSAY
482 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
75
147
1
right lobe of liver
7
2
1
2
cell line
HepG2
217
5
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
Liver fetal (hepatocyte)
1
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