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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
93
total RNA-seq
6
ATAC-seq
2
WGBS
1
DNase-seq
Assay category
358
DNA binding
93
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
214
transcription factor
139
histone modification
138
histone
75
broad histone mark
66
recombinant protein
62
narrow histone mark
31
RNA binding protein
11
chromatin remodeller
2
control
1
other context
1
other post-translational modification
Date released
568
February, 2021
276
May, 2021
230
August, 2017
225
November, 2017
207
May, 2020
200
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
77
December, 2017
72
September, 2018
70
November, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
23
June, 2019
16
March, 2020
12
May, 2023
10
October, 2017
7
August, 2020
7
September, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
535
bam
531
bigWig
472
fastq
400
bed narrowPeak
319
bigBed narrowPeak
93
tsv
bed broadPeak
71
tagAlign
64
bigBed broadPeak
34
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
Organism
460
Homo sapiens
Biosample type
204
tissue
173
cell line
48
in vitro differentiated cells
35
primary cell
Organ
192
liver
146
pancreas
69
connective tissue
52
brain
17
epithelium
16
adipose tissue
Project
460
AMP
Genome assembly (visualization)
460
GRCh38
451
hg19
Lab
460
AMP-T2D consortium
Audit category:
42
missing controlled_by
Audit category:
22
inconsistent control read length
3
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
460 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
tissue
islet of Langerhans
21
89
1
liver
18
layer of hippocampus
16
white adipose tissue
12
caudate nucleus
11
+ See 8 more…
cell line
HepG2
173
in vitro differentiated cells
adipocyte
48
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
osteoblast
4
1
pancreatic acinar cell
1
+ See 1 more…
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