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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
WGBS
Assay category
15
DNA binding
6
Transcription
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
10
June, 2019
5
July, 2019
5
May, 2019
2
March, 2020
Available data
59
bam
59
bigWig
52
bed narrowPeak
52
bigBed narrowPeak
37
bed bed3+
bed broadPeak
37
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
22
Homo sapiens
Biosample type
12
primary cell
10
tissue
Organ
621
pancreas
557
connective tissue
482
liver
422
adipose tissue
274
epithelium
236
heart
176
blood vessel
176
vasculature
171
brain
127
kidney
124
artery
66
bone element
60
limb
54
blood
54
bodily fluid
29
embryo
29
nerve
20
musculature of body
15
spleen
10
vein
8
skeleton
2
eye
1
pericardium
1
pituitary gland
Project
22
AMP
Genome assembly (visualization)
57
hg19
22
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
total RNA-seq
small RNA-seq
WGBS
primary cell
skeletal muscle satellite cell
7
1
1
retinal pigment epithelial cell
2
skeletal muscle cell
1
tissue
muscle of leg
5
1
psoas muscle
2
skeletal muscle tissue
1
1
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