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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 1190ChIP-seq
  • 233ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2DNase-seq
  • 2Hi-C
Assay category
  • 1401Transcription
  • 1190DNA binding
  • 235DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 764histone modification
  • 763histone
  • 412transcription factor
  • 391narrow histone mark
  • 371broad histone mark
  • 93RNA binding protein
  • 88recombinant protein
  • 29chromatin remodeller
  • 12control
  • 4other context
  • 4other post-translational modification
Date released
  • 568February, 2021
  • 276May, 2021
  • 230August, 2017
  • 225November, 2017
  • 207May, 2020
  • 200October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 77December, 2017
  • 72September, 2018
  • 70November, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 23June, 2019
  • 16March, 2020
  • 12May, 2023
  • 10October, 2017
  • 7August, 2020
  • 7September, 2017
  • 5December, 2019
  • 5November, 2020
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2845Homo sapiens
Biosample type
  • 1668tissue
  • 491primary cell
  • 419cell line
  • 264in vitro differentiated cells
  • 3stem cell
Organ
  • 621pancreas
  • 557connective tissue
  • 482liver
  • 422adipose tissue
  • 274epithelium
  • 236heart
  • 176blood vessel
  • 176vasculature
  • 171brain
  • 127kidney
  • 124artery
  • 66bone element
  • 60limb
  • 54blood
  • 54bodily fluid
  • 29embryo
  • 29nerve
  • 20musculature of body
  • 15spleen
  • 10vein
  • 8skeleton
  • 2eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2648AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2915hg19
  • 2845GRCh38
  • 5hg18
Lab
  • 2537AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 192inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 77missing controlled_by
Audit category:
  • 41inconsistent control read length
  • 7inconsistent control run_type
  • 2inconsistent assembly
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

2845 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
DNase-seq
Hi-C
tissue
adipose tissue38212
islet of Langerhans260252161
liver147751
kidney2075
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2521711
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte448
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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