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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 106single cell RNA-seq
  • 49ChIP-seq
  • 26ATAC-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 49DNA binding
  • 26DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 23transcription factor
  • 17histone
  • 17histone modification
  • 12control
  • 12narrow histone mark
  • 5broad histone mark
  • 1RNA binding protein
Date released
  • 545February, 2021
  • 188May, 2020
  • 173May, 2021
  • 164July, 2018
  • 131August, 2017
  • 74July, 2019
  • 49April, 2018
  • 26September, 2018
  • 20November, 2019
  • 19October, 2019
  • 15August, 2021
  • 15February, 2018
  • 13March, 2020
  • 12May, 2023
  • 7August, 2020
  • 7November, 2018
  • 5December, 2017
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 2October, 2017
  • 2October, 2018
  • 2September, 2017
  • 1March, 2023
Available data
  • 2959bam
  • 2930bigWig
  • bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 1495Homo sapiens
Biosample type
  • 976tissue
  • 275primary cell
  • 137in vitro differentiated cells
  • 106cell line
  • 1stem cell
Organ
  • 495connective tissue
  • 447pancreas
  • 413adipose tissue
  • 164liver
  • 156epithelium
  • 76heart
  • 59blood vessel
  • 59vasculature
  • 58bone element
  • 54artery
  • 23kidney
  • 16brain
  • 15embryo
  • 7musculature of body
  • 5limb
  • 4nerve
  • 2spleen
  • 1pericardium
Project
  • 1386AMP
  • 98T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 1615hg19
  • 1495GRCh38
  • 5hg18
Lab
  • 1374AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 11Katalin Susztak, Upenn
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 134inconsistent ontology term
Audit category:
  • 38missing controlled_by
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

1495 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue3822
islet of Langerhans2606113
liver14711
bone tissue58
white adipose tissue12
primary cell
monocyte53
pancreatic alpha cell10127
pancreatic beta cell10123
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
adipocyte46
induced pluripotent stem cell9
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
H1-hESC8
HepG251
early embryonic cell2
stem cell
hESC1
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