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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
310
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
253
transcription factor
81
recombinant protein
53
histone modification
52
histone
47
RNA binding protein
34
narrow histone mark
18
broad histone mark
18
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
162
May, 2020
52
November, 2018
December, 2017
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
481
bam
478
bigWig
317
bed narrowPeak
293
fastq
276
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
481
Homo sapiens
Biosample type
268
cell line
202
tissue
11
primary cell
Organ
635
pancreas
566
connective tissue
481
liver
424
adipose tissue
278
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
20
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
481
AMP
Genome assembly (visualization)
575
hg19
481
GRCh38
Lab
481
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
files.file_type!
bedpe
month_released!
December, 2017
BIOSAMPLE
ASSAY
481 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
261
5
1
1
tissue
liver
46
147
2
1
right lobe of liver
2
1
1
2
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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