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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
165
DNA binding
12
Transcription
2
DNA accessibility
Target of assay
165
histone
165
histone modification
104
narrow histone mark
61
broad histone mark
3
control
Date released
78
October, 2019
57
November, 2017
25
May, 2019
12
July, 2019
7
October, 2017
Available data
215
bam
214
bigWig
201
bed narrowPeak
126
bigBed narrowPeak
82
tagAlign
46
bed broadPeak
bigBed broadPeak
32
bed bed3+
15
fastq
12
tsv
1
tagAlign bed3+
Organism
179
Homo sapiens
Biosample type
176
tissue
3
primary cell
Organ
627
pancreas
557
connective tissue
482
liver
422
adipose tissue
274
epithelium
236
heart
179
brain
176
blood vessel
176
vasculature
kidney
124
artery
66
bone element
60
limb
54
blood
54
bodily fluid
29
embryo
29
nerve
20
musculature of body
15
spleen
10
vein
8
skeleton
2
eye
1
pericardium
1
pituitary gland
Project
179
AMP
Genome assembly (visualization)
179
GRCh38
133
hg19
Lab
179
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
bigBed broadPeak
hdf5
organ_slims!
kidney
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
brain
11
1
caudate nucleus
12
+ See 67 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
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