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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
Assay category
29
DNA binding
Target of assay
778
histone modification
777
histone
412
transcription factor
397
narrow histone mark
379
broad histone mark
93
RNA binding protein
88
recombinant protein
29
chromatin remodeller
12
control
4
other context
4
other post-translational modification
Date released
9
November, 2017
7
November, 2018
6
January, 2019
3
December, 2017
2
August, 2017
2
December, 2018
Available data
34
bam
34
bed narrowPeak
34
bigWig
34
fastq
32
bigBed narrowPeak
5
bed broadPeak
bigBed broadPeak
Organism
29
Homo sapiens
Biosample type
24
cell line
3
in vitro differentiated cells
2
tissue
Organ
17
liver
10
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
29
AMP
Genome assembly (visualization)
31
hg19
29
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
6
inconsistent control run_type
files.file_type!
bigBed broadPeak
month_released!
July, 2018
organ_slims!
skin of body
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
cell line
HepG2
14
GM12878
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
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