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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 499ChIP-seq
  • 210ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 499DNA binding
  • 210DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 414histone modification
  • 413histone
  • 262narrow histone mark
  • 150broad histone mark
  • 76transcription factor
  • 12RNA binding protein
  • 12control
  • 7recombinant protein
  • 2chromatin remodeller
Date released
  • 568February, 2021
  • 276May, 2021
  • 211August, 2017
  • 207May, 2020
  • 164July, 2018
  • 141October, 2019
  • 105August, 2021
  • 79July, 2019
  • 58September, 2018
  • 57November, 2019
  • 49April, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 27December, 2017
  • 16March, 2020
  • 12May, 2023
  • 8October, 2017
  • 7August, 2020
  • 7November, 2018
  • 5December, 2019
  • 5January, 2019
  • 5November, 2020
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 2October, 2018
  • 2September, 2017
  • 1March, 2023
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2129Homo sapiens
Biosample type
  • 1304tissue
  • 431primary cell
  • 250in vitro differentiated cells
  • 141cell line
  • 3stem cell
Organ
  • 546pancreas
  • 541connective tissue
  • 415adipose tissue
  • 219epithelium
  • 205liver
  • 172heart
  • 109blood vessel
  • 109vasculature
  • 103artery
  • 102kidney
  • 91brain
  • 66bone element
  • 29embryo
  • 13limb
  • 8skeleton
  • 7musculature of body
  • 5nerve
  • 3spleen
  • 1pericardium
  • 1pituitary gland
Project
  • 1932AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2250hg19
  • 2129GRCh38
  • 5hg18
Lab
  • 1820AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 172inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 71missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

2129 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue3822
islet of Langerhans26025226
liver147371
kidney275
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell107712
pancreatic beta cell107312
pancreatic ductal cell41310
pancreatic acinar cell4812
in vitro differentiated cells
cardiomyocytes593
adipocyte448
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
cell line
smooth muscle cell of the coronary artery5248
EndoC_BH133131
H1-hESC8
HepG2511
RCC 7860 HIF1a re-expression13
stem cell
hESC3
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