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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 183ATAC-seq
  • 12ChIP-seq
  • 1Hi-C
  • 1total RNA-seq
Assay category
  • 183DNA accessibility
  • 12DNA binding
  • 13D chromatin structure
  • 1Transcription
Target of assay
  • 9control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1broad histone mark
Date released
  • 74August, 2021
  • 35February, 2023
  • 26November, 2019
  • 17February, 2021
  • 13May, 2021
  • 12May, 2023
  • 6October, 2019
  • 5December, 2017
  • 2August, 2017
  • 2March, 2019
  • 2September, 2017
  • 1March, 2023
  • 1November, 2017
  • 1November, 2020
Available data
  • 2959bam
  • bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 197Homo sapiens
Biosample type
  • 147tissue
  • 22in vitro differentiated cells
  • 17primary cell
  • 10cell line
  • 1stem cell
Organ
  • 75kidney
  • 43artery
  • 43blood vessel
  • 43heart
  • 43vasculature
  • 24pancreas
  • 8bone element
  • 8skeleton
  • 6limb
  • 4connective tissue
  • 3brain
  • 3liver
  • 2adipose tissue
  • 2epithelium
  • 1embryo
Project
  • 196AMP
  • 1ITG
Genome assembly (visualization)
  • 197GRCh38
  • 197hg19
Lab
  • 119AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 11inconsistent ontology term
  • 1inconsistent replicate
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

197 results

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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
tissue
kidney75
coronary artery35
islet of Langerhans212
adipose tissue1
adipose tissue(adipose white tissue)1
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
Posterior foregut1
adipocyte1
cardiac precursors (cardiac muscle cell)1
primary cell
monocyte13
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
chondrocytes1
osteoblast1
cell line
smooth muscle cell of the coronary artery8
EndoC_BH11
HepG21
stem cell
hESC1
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