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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
804
histone modification
803
histone
448
transcription factor
410
narrow histone mark
392
broad histone mark
100
RNA binding protein
88
recombinant protein
34
chromatin remodeller
12
control
5
other context
5
other post-translational modification
Date released
13
November, 2017
7
November, 2018
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
34
bam
34
bed narrowPeak
34
bigWig
34
fastq
32
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
34
Homo sapiens
Biosample type
28
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
21
liver
10
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
34
AMP
Genome assembly (visualization)
36
hg19
34
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
12
inconsistent control read length
6
inconsistent control run_type
files.file_type!
cool
organ_slims!
ovary
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
18
GM12878
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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