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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1138total RNA-seq
  • 614ChIP-seq
  • 196DNase-seq
  • 192ATAC-seq
  • 18small RNA-seq
  • 8WGBS
  • 8single cell RNA-seq
  • 2Hi-C
Assay category
  • 1164Transcription
  • 614DNA binding
  • 388DNA accessibility
  • 8DNA methylation
  • 23D chromatin structure
Target of assay
  • 578histone
  • 578histone modification
  • 302narrow histone mark
  • 276broad histone mark
  • 36transcription factor
  • 18RNA binding protein
  • 7recombinant protein
  • 3control
Date released
  • 568February, 2021
  • 276May, 2021
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 114July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 64April, 2019
  • 57November, 2017
  • 57November, 2019
  • 40May, 2024
  • 35February, 2023
  • 16March, 2020
  • 14October, 2018
  • 12May, 2023
  • 6November, 2020
  • 5April, 2018
  • 5December, 2019
  • 2March, 2019
  • 1March, 2023
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2176Homo sapiens
Biosample type
  • 1579tissue
  • 307primary cell
  • 147in vitro differentiated cells
  • 143cell line
Organ
  • 491connective tissue
  • 401adipose tissue
  • 278pancreas
  • 266heart
  • 205kidney
  • 202brain
  • 188liver
  • 187vasculature
  • 185blood vessel
  • 128artery
  • 113epithelium
  • 96limb
  • 66bone element
  • 53musculature of body
  • 31nerve
  • 18ureter
  • 12vein
  • 10embryo
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 1989AMP
  • 186T1D
  • 1ITG
Genome assembly (visualization)
  • 2205hg19
  • 2176GRCh38
Lab
  • 1878AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 187inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

2176 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
Hi-C
tissue
adipose tissue382
islet of Langerhans169221
liver147241
kidney201375
bone tissue58
primary cell
monocyte538413
endothelial cell of umbilical vein102
epithelial cell of proximal tubule181
hepatocyte531
skeletal muscle satellite cell171
in vitro differentiated cells
cardiomyocytes593
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
induced pluripotent stem cell9
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cell line
smooth muscle cell of the coronary artery5248
EndoC_BH133131
H1-hESC8
Panc1611
RCC 7860 HIF1a re-expression13
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