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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
217
total RNA-seq
11
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
WGBS
Assay category
360
DNA binding
220
Transcription
16
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
41
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
162
May, 2020
67
February, 2021
52
November, 2018
50
December, 2017
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
March, 2020
Available data
597
bam
586
bigWig
375
bed narrowPeak
343
fastq
326
bigBed narrowPeak
220
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
597
Homo sapiens
Biosample type
304
tissue
268
cell line
14
in vitro differentiated cells
11
primary cell
Organ
634
pancreas
566
connective tissue
531
liver
424
adipose tissue
290
epithelium
251
heart
201
kidney
192
brain
152
vasculature
148
blood vessel
125
artery
91
limb
66
bone element
54
blood
54
bodily fluid
48
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
597
AMP
Genome assembly (visualization)
695
hg19
597
GRCh38
Lab
597
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
files.file_type!
ibed
month_released!
May, 2019
BIOSAMPLE
ASSAY
597 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
tissue
liver
75
147
2
1
bone tissue
58
right lobe of liver
7
2
1
1
2
distal epiphysis
1
distal epiphysis of femur
1
+ See 6 more…
cell line
HepG2
261
5
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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