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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
329
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
329
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
51
RNA binding protein
39
histone modification
38
histone
22
broad histone mark
21
chromatin remodeller
16
narrow histone mark
2
other context
2
other post-translational modification
1
control
Date released
208
November, 2017
143
May, 2020
52
November, 2018
50
December, 2017
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
February, 2021
1
March, 2020
Available data
531
bam
528
bigWig
367
bed narrowPeak
343
fastq
326
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
500
Homo sapiens
Biosample type
259
cell line
219
tissue
14
in vitro differentiated cells
8
primary cell
Organ
627
pancreas
566
connective tissue
500
liver
424
adipose tissue
289
epithelium
262
heart
205
kidney
187
vasculature
183
blood vessel
135
brain
124
artery
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
Project
500
AMP
Genome assembly (visualization)
583
hg19
500
GRCh38
Lab
500
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
6
inconsistent control run_type
files.file_type!
tagAlign
zippedFastqFolder
organ_slims!
limb
BIOSAMPLE
ASSAY
500 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
252
5
1
1
tissue
liver
56
147
2
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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