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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
13
total RNA-seq
Assay category
80
DNA binding
13
Transcription
Target of assay
42
transcription factor
33
histone
33
histone modification
18
narrow histone mark
15
broad histone mark
5
control
4
RNA binding protein
3
chromatin remodeller
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
93
bam
88
bigWig
77
fastq
75
bed narrowPeak
50
bigBed narrowPeak
15
bed bed3+
13
tsv
Organism
93
Homo sapiens
Biosample type
45
tissue
40
in vitro differentiated cells
5
cell line
3
stem cell
Organ
51
liver
19
epithelium
9
embryo
6
pancreas
2
heart
2
musculature of body
1
blood vessel
1
vasculature
Project
88
AMP
5
T1D
Genome assembly (visualization)
109
hg19
93
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
27
inconsistent control
7
inconsistent ontology term
Audit category:
11
inconsistent control read length
files.file_type!
vcf
files.file_type!!
vcf
BIOSAMPLE
ASSAY
93 results
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Clear Filters
ChIP-seq
total RNA-seq
tissue
liver
29
1
right lobe of liver
7
islet of Langerhans
2
psoas muscle
2
aorta
1
+ See 3 more…
in vitro differentiated cells
hepatocyte
14
pancreatic endoderm
7
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 3 more…
cell line
EndoC_BH1
1
2
early embryonic cell
2
stem cell
hESC
3
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