Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
46
ATAC-seq
37
ChIP-seq
5
DNase-seq
2
WGBS
Assay category
53
Transcription
51
DNA accessibility
37
DNA binding
2
DNA methylation
Target of assay
26
histone
26
histone modification
18
broad histone mark
11
transcription factor
8
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
21
October, 2019
6
January, 2019
6
November, 2018
3
December, 2018
3
May, 2019
2
July, 2019
2
June, 2019
1
October, 2017
Available data
108
bam
100
bigWig
88
bed narrowPeak
53
tsv
38
bigBed narrowPeak
16
fastq
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
143
Homo sapiens
Biosample type
78
tissue
64
cell line
1
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
epithelium
266
heart
217
brain
191
vasculature
187
blood vessel
141
kidney
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
143
AMP
Genome assembly (visualization)
143
GRCh38
106
hg19
Lab
143
AMP-T2D consortium
files.file_type!
xls
organ_slims!
epithelium
BIOSAMPLE
ASSAY
143 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
tissue
coronary artery
36
3
2
tibial artery
1
18
2
spleen
1
12
1
2
cell line
smooth muscle cell of the coronary artery
52
8
4
primary cell
smooth muscle cell of the coronary artery
1
Download