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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1276total RNA-seq
  • 1224ChIP-seq
  • 207DNase-seq
  • 111ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
Assay category
  • 1400Transcription
  • 1224DNA binding
  • 318DNA accessibility
  • 17DNA methylation
Target of assay
  • 767histone modification
  • 766histone
  • 443transcription factor
  • 393narrow histone mark
  • 372broad histone mark
  • 95RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 280November, 2017
  • 276May, 2021
  • 249August, 2017
  • 210June, 2019
  • 207May, 2020
  • 204October, 2019
  • 164July, 2018
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 41August, 2021
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 13October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2953Homo sapiens
Biosample type
  • 1703tissue
  • 525primary cell
  • 463cell line
  • 265in vitro differentiated cells
  • 3stem cell
Organ
  • 621pancreas
  • 565connective tissue
  • 531liver
  • 423adipose tissue
  • 284epithelium
  • 215brain
  • 191heart
  • 156vasculature
  • 152blood vessel
  • 130kidney
  • 96limb
  • 93artery
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2773AMP
  • 186T1D
Genome assembly (visualization)
  • 2998hg19
  • 2959GRCh38
Lab
  • 2779AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
Audit category:
  • 196inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

2959 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
tissue
adipose tissue38112
islet of Langerhans260251196
liver1477521
bone tissue58
body of pancreas2264422
primary cell
monocyte538413
pancreatic beta cell107712
pancreatic alpha cell107612
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2526111
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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