Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 53ChIP-seq
  • 1Hi-C
Assay category
  • 204DNA accessibility
  • 53DNA binding
  • 13D chromatin structure
Target of assay
  • 25histone
  • 25histone modification
  • 19transcription factor
  • 13narrow histone mark
  • 12broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 187June, 2019
  • 33August, 2017
  • 15December, 2017
  • 9November, 2018
  • 8October, 2019
  • 3August, 2021
  • 2September, 2017
  • 1November, 2020
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 258Homo sapiens
Biosample type
  • 204tissue
  • 30primary cell
  • 19in vitro differentiated cells
  • 3stem cell
  • 2cell line
Organ
  • 78kidney
  • 36limb
  • 33musculature of body
  • 32brain
  • 30heart
  • 29pancreas
  • 19connective tissue
  • 19epithelium
  • 18ureter
  • 11liver
  • 11vasculature
  • 9blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 258AMP
Genome assembly (visualization)
  • 258GRCh38
  • 250hg19
Lab
  • 258AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

258 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
primary cell
hepatocyte13
cardiac fibroblast3
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
kidney tubule cell2
in vitro differentiated cells
adipocyte7
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
stem cell
hESC3
cell line
Panc111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego