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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 205DNase-seq
  • 76ChIP-seq
  • 1ATAC-seq
Assay category
  • 206DNA accessibility
  • 76DNA binding
Target of assay
  • 40histone
  • 40histone modification
  • 36transcription factor
  • 21broad histone mark
  • 19narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 55November, 2017
  • 19August, 2017
  • 9November, 2018
  • 7October, 2019
  • 4October, 2017
  • 1November, 2020
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 276Homo sapiens
Biosample type
  • 191tissue
  • 45cell line
  • 45primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 49liver
  • 46brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 20epithelium
  • 18ureter
  • 15vasculature
  • 14pancreas
  • 11blood vessel
  • 9connective tissue
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 282AMP
Genome assembly (visualization)
  • 298hg19
  • 282GRCh38
Lab
  • 281AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

282 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG244
Panc11
primary cell
skeletal muscle myoblast12
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
choroid plexus epithelial cell12
in vitro differentiated cells
adipocyte1
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