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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1217ChIP-seq
  • 208ATAC-seq
  • 207DNase-seq
Assay category
  • 1217DNA binding
  • 415DNA accessibility
Target of assay
  • 787histone modification
  • 786histone
  • 425transcription factor
  • 398narrow histone mark
  • 387broad histone mark
  • 99RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 280November, 2017
  • 210June, 2019
  • 188October, 2019
  • 118August, 2017
  • 103May, 2021
  • 96May, 2019
  • 90August, 2021
  • 72December, 2017
  • 72November, 2018
  • 64April, 2019
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 37November, 2019
  • 35February, 2023
  • 30December, 2018
  • 23February, 2021
  • 21January, 2019
  • 19May, 2020
  • 16February, 2018
  • 12October, 2017
  • 5July, 2019
  • 5September, 2017
  • 3March, 2020
  • 2November, 2020
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 1626Homo sapiens
Biosample type
  • 883tissue
  • 358cell line
  • 261primary cell
  • 128in vitro differentiated cells
  • 2stem cell
Organ
  • 367liver
  • 201brain
  • 190heart
  • 188pancreas
  • 182kidney
  • 138epithelium
  • 132vasculature
  • 128blood vessel
  • 91limb
  • 74artery
  • 71connective tissue
  • 54blood
  • 54bodily fluid
  • 46musculature of body
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 12vein
  • 11adipose tissue
  • 8bone element
  • 8skeleton
  • 6eye
  • 1pituitary gland
Project
  • 1544AMP
  • 88T1D
Genome assembly (visualization)
  • 1632GRCh38
  • 1598hg19
Lab
  • 1444AMP-T2D consortium
  • 84Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 62inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 41missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

1632 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
tissue
kidney206413
liver742
coronary artery3362
left cardiac atrium401
body of pancreas2644
cell line
HepG22611
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
primary cell
monocyte8413
pancreatic ductal cell134
pancreatic beta cell77
pancreatic acinar cell85
pancreatic alpha cell76
in vitro differentiated cells
adipocyte421
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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