Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
49
ChIP-seq
Assay category
205
DNA accessibility
49
DNA binding
Target of assay
36
transcription factor
26
histone
26
histone modification
13
broad histone mark
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
42
November, 2017
9
November, 2018
8
August, 2017
7
October, 2019
1
November, 2020
Available data
2562
bam
2518
bigWig
1400
tsv
1230
bed narrowPeak
846
bigBed narrowPeak
839
fastq
259
bed broadPeak
254
bigBed broadPeak
245
bed bed3+
107
tagAlign
64
xls
17
bed bedMethyl
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
Organism
254
Homo sapiens
Biosample type
176
tissue
40
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
44
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
254
AMP
Genome assembly (visualization)
254
GRCh38
248
hg19
Lab
254
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
7
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed bedMethyl
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
254 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
39
Panc1
1
primary cell
skeletal muscle myoblast
7
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download