Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 205DNase-seq
  • 62ChIP-seq
Assay category
  • 205DNA accessibility
  • 62DNA binding
Target of assay
  • 36transcription factor
  • 26histone
  • 26histone modification
  • 13broad histone mark
  • 13narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 50November, 2017
  • 13August, 2017
  • 9November, 2018
  • 7October, 2019
  • 1November, 2020
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1401tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 259bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
  • 1tbi
Organism
  • 267Homo sapiens
Biosample type
  • 176tissue
  • 45cell line
  • 45primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 49liver
  • 38brain
  • 36limb
  • 33musculature of body
  • 30heart
  • 20epithelium
  • 18ureter
  • 15vasculature
  • 11blood vessel
  • 9connective tissue
  • 7pancreas
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 267AMP
Genome assembly (visualization)
  • 267GRCh38
  • 262hg19
Lab
  • 267AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 11inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

267 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
cell line
HepG244
Panc11
primary cell
skeletal muscle myoblast12
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
choroid plexus epithelial cell12
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego