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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
ChIP-seq
187
DNase-seq
Assay category
245
DNA binding
187
DNA accessibility
Target of assay
234
histone
234
histone modification
146
broad histone mark
88
narrow histone mark
11
transcription factor
9
RNA binding protein
Date released
205
June, 2019
64
April, 2019
57
May, 2019
57
November, 2017
34
October, 2019
14
October, 2018
1
November, 2020
Available data
2719
bam
2698
bigWig
1416
bed narrowPeak
1342
tsv
fastq
839
bigBed narrowPeak
271
bed broadPeak
256
bigBed broadPeak
249
bed bed3+
242
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
432
Homo sapiens
Biosample type
374
tissue
50
primary cell
8
cell line
Organ
112
brain
103
kidney
94
heart
83
limb
78
vasculature
blood vessel
46
musculature of body
35
epithelium
26
nerve
26
pancreas
25
artery
18
ureter
16
connective tissue
12
vein
6
eye
2
liver
1
adipose tissue
Project
432
AMP
Genome assembly (visualization)
432
GRCh38
365
hg19
Lab
432
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
files.file_type!
fastq
organ_slims!
blood vessel
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
432 results
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Clear Filters
ChIP-seq
DNase-seq
tissue
heart left ventricle
28
3
kidney
18
13
tibial nerve
24
2
heart
7
18
muscle of leg
5
13
+ See 42 more…
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
kidney epithelial cell
4
1
cardiac muscle cell
2
1
+ See 16 more…
cell line
Panc1
6
1
glomerular visceral epithelial cell
1
See all biosamples
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