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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 767ChIP-seq
  • 207DNase-seq
  • 24ATAC-seq
Assay category
  • 767DNA binding
  • 231DNA accessibility
Target of assay
  • 390histone
  • 390histone modification
  • 372transcription factor
  • 242broad histone mark
  • 148narrow histone mark
  • 88RNA binding protein
  • 81recombinant protein
  • 32chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 280November, 2017
  • 210June, 2019
  • 96May, 2019
  • 72November, 2018
  • 66October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 38August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 1November, 2020
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 992Homo sapiens
Biosample type
  • 555tissue
  • 323cell line
  • 105primary cell
  • 15in vitro differentiated cells
Organ
  • 326liver
  • 126brain
  • 103kidney
  • 94heart
  • 89pancreas
  • 83limb
  • 82vasculature
  • 78blood vessel
  • 75epithelium
  • 54blood
  • 54bodily fluid
  • 46musculature of body
  • 26nerve
  • 25artery
  • 25connective tissue
  • 18ureter
  • 13spleen
  • 12vein
  • 9adipose tissue
  • 6eye
Project
  • 998AMP
Genome assembly (visualization)
  • 998GRCh38
  • 963hg19
Lab
  • 998AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 8missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 7inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

998 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
tissue
liver382
heart left ventricle283
kidney1813
body of pancreas264
tibial nerve242
cell line
HepG2261
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast13
endothelial cell of umbilical vein102
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte1
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