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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
10
ATAC-seq
1
Hi-C
Assay category
40
DNA binding
10
DNA accessibility
1
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
40
May, 2024
7
August, 2020
3
September, 2020
1
October, 2019
Available data
bam
2929
bigWig
1632
bed narrowPeak
1400
tsv
998
bigBed narrowPeak
950
fastq
281
bed broadPeak
267
bigBed broadPeak
258
bed bed3+
246
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
51
Homo sapiens
Biosample type
40
tissue
10
primary cell
1
cell line
Organ
40
heart
11
pancreas
10
epithelium
Project
41
AMP
10
HPAP
Genome assembly (visualization)
116
hg19
51
GRCh38
5
hg18
Lab
40
Patrick T. Ellinor, Broad
10
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
files.file_type!
bam
cool
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
ATAC-seq
Hi-C
tissue
left cardiac atrium
40
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
cell line
Panc1
1
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