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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
35
ChIP-seq
18
small RNA-seq
8
WGBS
6
ATAC-seq
3
single cell RNA-seq
Assay category
268
Transcription
35
DNA binding
8
DNA methylation
6
DNA accessibility
Target of assay
35
histone
35
histone modification
28
narrow histone mark
7
broad histone mark
3
control
Date released
551
February, 2021
279
November, 2017
263
May, 2021
247
August, 2017
210
June, 2019
207
May, 2020
201
October, 2019
164
July, 2018
96
May, 2019
79
July, 2019
79
November, 2018
72
December, 2017
72
September, 2018
64
April, 2019
49
April, 2018
47
October, 2018
40
May, 2024
31
August, 2021
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
September, 2020
Available data
327
bam
317
bigWig
268
tsv
114
bed narrowPeak
64
xls
35
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
3
bed bed3+
Organism
317
Homo sapiens
Biosample type
223
tissue
66
primary cell
20
in vitro differentiated cells
8
cell line
Organ
172
liver
21
heart
16
connective tissue
12
adipose tissue
12
brain
8
blood vessel
8
embryo
8
epithelium
8
vasculature
6
kidney
5
musculature of body
4
pancreas
3
artery
1
limb
1
pericardium
Project
272
AMP
45
T1D
Genome assembly (visualization)
382
hg19
317
GRCh38
Lab
272
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
317 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
ATAC-seq
single cell RNA-seq
tissue
liver
145
19
1
heart left ventricle
2
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 20 more…
primary cell
hepatocyte
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 36 more…
in vitro differentiated cells
neural progenitor cell
7
13
cell line
H1-hESC
8
See all biosamples
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