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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1276total RNA-seq
  • 1254ChIP-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 51ATAC-seq
  • 18small RNA-seq
  • 17WGBS
  • 1Hi-C
Assay category
  • 1400Transcription
  • 1254DNA binding
  • 258DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 801histone modification
  • 800histone
  • 448transcription factor
  • 408narrow histone mark
  • 391broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
  • 3control
Date released
  • 551February, 2021
  • 279November, 2017
  • 263May, 2021
  • 247August, 2017
  • 210June, 2019
  • 207May, 2020
  • 201October, 2019
  • 164July, 2018
  • 96May, 2019
  • 79July, 2019
  • 79November, 2018
  • 72December, 2017
  • 72September, 2018
  • 64April, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 31August, 2021
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2924Homo sapiens
Biosample type
  • 1712tissue
  • 519primary cell
  • 454cell line
  • 243in vitro differentiated cells
  • 2stem cell
Organ
  • 611pancreas
  • 562connective tissue
  • 528liver
  • 422adipose tissue
  • 292epithelium
  • 223heart
  • 214brain
  • 148vasculature
  • 144blood vessel
  • 130kidney
  • 90limb
  • 85artery
  • 58bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 28embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2734AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 3016hg19
  • 2930GRCh38
  • 5hg18
Lab
  • 2699AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Stephen Parker, UMich
Audit category:
  • 185inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
BIOSAMPLE
ASSAY

2930 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38112
islet of Langerhans26023161
liver1477421
bone tissue58
left cardiac atrium401
primary cell
monocyte5384
pancreatic alpha cell1071213
pancreatic beta cell1071210
pancreatic ductal cell413104
pancreatic acinar cell48125
cell line
HepG252611
smooth muscle cell of the coronary artery524
GM1287854
EndoC_BH13313
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4471
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm412
stem cell
hESC2
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