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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
single cell RNA-seq
28
total RNA-seq
27
ChIP-seq
25
ATAC-seq
Assay category
94
Transcription
27
DNA binding
25
DNA accessibility
Target of assay
51
histone
51
histone modification
narrow histone mark
23
broad histone mark
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
50
September, 2018
33
July, 2018
29
April, 2018
9
August, 2017
9
December, 2017
August, 2020
5
September, 2017
3
August, 2018
3
September, 2020
2
November, 2017
2
October, 2018
1
June, 2018
Available data
237
bigWig
236
bam
146
fastq
146
tsv
90
bed narrowPeak
60
bigBed narrowPeak
18
bed broadPeak
18
bigBed broadPeak
17
bed bed3+
2
tagAlign
Organism
146
Homo sapiens
Biosample type
137
primary cell
9
in vitro differentiated cells
Organ
325
liver
302
pancreas
146
epithelium
62
connective tissue
53
blood
53
bodily fluid
22
adipose tissue
14
spleen
12
embryo
11
brain
2
vasculature
1
blood vessel
Project
143
AMP
3
HPAP
Genome assembly (visualization)
146
GRCh38
145
hg19
Lab
143
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
Audit category:
10
missing controlled_by
month_released!
August, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
146 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
primary cell
pancreatic alpha cell
12
10
3
8
pancreatic beta cell
12
10
3
8
pancreatic ductal cell
9
4
6
4
pancreatic acinar cell
9
4
4
5
pancreatic delta cell
11
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in vitro differentiated cells
hepatocyte
9
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