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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 652ChIP-seq
  • 139total RNA-seq
  • 98single cell RNA-seq
  • 42ATAC-seq
  • 11DNase-seq
  • 9WGBS
Assay category
  • 652DNA binding
  • 237Transcription
  • 53DNA accessibility
  • 9DNA methylation
Target of assay
  • 412transcription factor
  • 226histone modification
  • 225histone
  • 116broad histone mark
  • 108narrow histone mark
  • 82RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 9control
  • 5other context
  • 5other post-translational modification
Date released
  • 249August, 2017
  • 223November, 2017
  • 79November, 2018
  • 77December, 2017
  • 72September, 2018
  • 50July, 2018
  • 44April, 2018
  • 33October, 2018
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 14October, 2017
  • 7August, 2020
  • 7September, 2017
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
Available data
  • 2959bam
  • 2930bigWig
  • 1632bed narrowPeak
  • 1400tsv
  • 998bigBed narrowPeak
  • 951fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 945Homo sapiens
Biosample type
  • 321cell line
  • 280tissue
  • 229primary cell
  • 118in vitro differentiated cells
  • 3stem cell
Organ
  • 357pancreas
  • 343liver
  • 181epithelium
  • 75connective tissue
  • 54blood
  • 54bodily fluid
  • 23adipose tissue
  • 19embryo
  • 16spleen
  • 15brain
  • 4vasculature
  • 2blood vessel
Project
  • 941AMP
  • 10HPAP
Genome assembly (visualization)
  • 1008hg19
  • 951GRCh38
  • 5hg18
Lab
  • 940AMP-T2D consortium
  • 10Klaus Kaestner, Upenn
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 9inconsistent ontology term
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

951 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG226151
GM1287854
tissue
islet of Langerhans2391611
liver512
body of pancreas25422
spleen12112
pancreas132
primary cell
pancreatic alpha cell7101213
pancreatic beta cell7101210
pancreatic ductal cell13494
pancreatic acinar cell8495
pancreatic endocrine cell23
in vitro differentiated cells
adipocyte481
pancreatic endoderm134
hepatocyte14
definitive endodermal cell72
primitive gut cell72
stem cell
hESC3
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