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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
Assay category
128
DNA binding
Target of assay
119
histone
119
histone modification
80
narrow histone mark
39
broad histone mark
9
transcription factor
Date released
40
November, 2017
40
October, 2019
19
May, 2020
16
August, 2021
5
February, 2021
5
May, 2021
3
October, 2017
Available data
2779
bam
2750
bigWig
1548
bed narrowPeak
1304
tsv
998
bigBed narrowPeak
951
fastq
bed broadPeak
267
bigBed broadPeak
258
bed bed3+
162
tagAlign
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
128
Homo sapiens
Biosample type
102
tissue
18
in vitro differentiated cells
5
cell line
3
primary cell
Organ
74
brain
22
liver
5
epithelium
4
artery
4
blood vessel
4
heart
4
vasculature
2
pancreas
1
pituitary gland
Project
128
AMP
Genome assembly (visualization)
128
GRCh38
97
hg19
Lab
128
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed broadPeak
xls
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
tissue
liver
19
caudate nucleus
11
layer of hippocampus
11
substantia nigra
11
cingulate gyrus
5
+ See 39 more…
in vitro differentiated cells
neural progenitor cell
13
cardiomyocytes
3
pancreatic PP cell
2
cell line
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
primary cell
hepatocyte
3
See all biosamples
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