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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
Assay category
226
DNA binding
Target of assay
221
histone
221
histone modification
126
narrow histone mark
95
broad histone mark
5
transcription factor
Date released
89
May, 2021
54
November, 2017
40
October, 2019
19
May, 2020
17
August, 2017
August, 2021
6
October, 2017
1
February, 2021
Available data
2732
bam
2721
bigWig
1375
bed narrowPeak
1331
tsv
951
fastq
880
bigBed narrowPeak
278
bed broadPeak
263
bigBed broadPeak
251
bed bed3+
226
tagAlign
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
220
Homo sapiens
Biosample type
116
tissue
95
primary cell
10
cell line
5
in vitro differentiated cells
Organ
82
brain
28
liver
8
pancreas
artery
4
blood vessel
4
heart
4
vasculature
2
epithelium
1
pituitary gland
Project
142
AMP
84
T1D
Genome assembly (visualization)
226
GRCh38
219
hg19
Lab
142
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
month_released!
August, 2021
May, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
226 results
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ChIP-seq
tissue
liver
19
caudate nucleus
12
substantia nigra
12
layer of hippocampus
11
brain
6
+ See 40 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
cell line
HepG2
9
iPSC derived cell line
1
in vitro differentiated cells
cardiomyocytes
3
pancreatic PP cell
2
See all biosamples
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