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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1268total RNA-seq
  • 1178ChIP-seq
  • 234ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1392Transcription
  • 1178DNA binding
  • 441DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 759histone modification
  • 758histone
  • 405transcription factor
  • 388narrow histone mark
  • 369broad histone mark
  • 93RNA binding protein
  • 88recombinant protein
  • 29chromatin remodeller
  • 12control
  • 4other context
  • 4other post-translational modification
Date released
  • 568February, 2021
  • 276May, 2021
  • 237November, 2017
  • 224August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 77November, 2018
  • 75December, 2017
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6February, 2018
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2862bam
  • 2833bigWig
  • 1547bed narrowPeak
  • 1391tsv
  • 943bigBed narrowPeak
  • 854fastq
  • 255bed bed3+
  • 239bed broadPeak
  • 233tagAlign
  • 224bigBed broadPeak
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 3024Homo sapiens
Biosample type
  • 1854tissue
  • 514primary cell
  • 419cell line
  • 240in vitro differentiated cells
  • 3stem cell
Organ
  • 618pancreas
  • 566connective tissue
  • 484liver
  • 424adipose tissue
  • 280epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 20embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2833AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 3096hg19
  • 3030GRCh38
  • 5hg18
Lab
  • 2721AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 196inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 76missing controlled_by
Audit category:
  • 41inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

3030 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260222216
liver1477321
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell101312
pancreatic beta cell101012
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2521611
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
hepatocyte14
stem cell
hESC3
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