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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1141total RNA-seq
  • 973ChIP-seq
  • 216ATAC-seq
  • 204DNase-seq
  • 79single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1238Transcription
  • 973DNA binding
  • 420DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 735histone modification
  • 734histone
  • 379narrow histone mark
  • 354broad histone mark
  • 227transcription factor
  • 76RNA binding protein
  • 25chromatin remodeller
  • 11control
  • 7recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 568February, 2021
  • 276May, 2021
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 154November, 2017
  • 139July, 2018
  • 107August, 2017
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 64April, 2019
  • 57November, 2019
  • 50December, 2017
  • 49April, 2018
  • 42October, 2018
  • 40May, 2024
  • 35February, 2023
  • 34November, 2018
  • 27December, 2018
  • 17February, 2018
  • 17January, 2019
  • 16March, 2020
  • 12May, 2023
  • 7August, 2020
  • 7October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3September, 2020
  • 2August, 2018
  • 2June, 2018
  • 2March, 2019
  • 1March, 2023
Available data
  • 2483bam
  • 2454bigWig
  • 1350bed narrowPeak
  • 1237tsv
  • 755bigBed narrowPeak
  • 474fastq
  • 270bed broadPeak
  • 262bigBed broadPeak
  • 244bed bed3+
  • 237tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2649Homo sapiens
Biosample type
  • 1687tissue
  • 422primary cell
  • 290cell line
  • 248in vitro differentiated cells
  • 3stem cell
Organ
  • 546connective tissue
  • 419pancreas
  • 409adipose tissue
  • 330liver
  • 266heart
  • 216epithelium
  • 213brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 53musculature of body
  • 42blood
  • 42bodily fluid
  • 31nerve
  • 25embryo
  • 18ureter
  • 13spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2453AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2733hg19
  • 2650GRCh38
  • 5hg18
Lab
  • 2342AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 189inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 17missing controlled_by
Audit category:
  • 41inconsistent control read length
  • 6inconsistent control run_type
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

2650 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue3822
islet of Langerhans171192116
liver1473711
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell71011
pancreatic beta cell7610
skeletal muscle myoblast112
endothelial cell of umbilical vein102
cell line
HepG210411
smooth muscle cell of the coronary artery5248
EndoC_BH133131
GM1287842
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte446
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
hepatocyte14
stem cell
hESC3
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