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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 1149ChIP-seq
  • 233ATAC-seq
  • 205DNase-seq
  • 72single cell RNA-seq
  • 18small RNA-seq
  • 13WGBS
  • 2Hi-C
  • 1snATAC-seq
Assay category
  • 1367Transcription
  • 1149DNA binding
  • 439DNA accessibility
  • 13DNA methylation
  • 23D chromatin structure
Target of assay
  • 748histone modification
  • 747histone
  • 393transcription factor
  • 384narrow histone mark
  • 362broad histone mark
  • 88recombinant protein
  • 67RNA binding protein
  • 16chromatin remodeller
  • 7control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 276May, 2021
  • 264November, 2017
  • 240August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 153July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 72September, 2018
  • 64April, 2019
  • 57November, 2018
  • 57November, 2019
  • 40May, 2024
  • 35February, 2023
  • 31December, 2017
  • 31February, 2018
  • 30October, 2018
  • 28April, 2018
  • 28December, 2018
  • 16March, 2020
  • 15January, 2019
  • 13October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3September, 2020
  • 2August, 2018
  • 2June, 2018
  • 2March, 2019
  • 1July, 2025
  • 1March, 2023
Available data
  • 2801bam
  • 2777bigWig
  • 1523bed narrowPeak
  • 1367tsv
  • 912bigBed narrowPeak
  • 793fastq
  • 280bed broadPeak
  • 265bigBed broadPeak
  • 246tagAlign
  • 242bed bed3+
  • 64xls
  • 13bed bedMethyl
  • 13bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
  • 1tbi
Organism
  • 2963Homo sapiens
Biosample type
  • 1823tissue
  • 502primary cell
  • 423cell line
  • 222in vitro differentiated cells
Organ
  • 589pancreas
  • 559connective tissue
  • 478liver
  • 422adipose tissue
  • 266heart
  • 252epithelium
  • 215brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54musculature of body
  • 45blood
  • 45bodily fluid
  • 31nerve
  • 20embryo
  • 18ureter
  • 12vein
  • 10spleen
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2773AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 3059hg19
  • 2970GRCh38
Lab
  • 2660AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 2Stephen Parker, UMich
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 194inconsistent ontology term
  • 27inconsistent control
  • 1inconsistent replicate
Audit category:
  • 69missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 4inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

2970 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
snATAC-seq
tissue
adipose tissue3821
islet of Langerhans260242216
liver1477411
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell107136
pancreatic beta cell107106
pancreatic acinar cell48511
pancreatic ductal cell41347
cell line
HepG2522911
smooth muscle cell of the coronary artery5248
EndoC_BH133131
GM1287845
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4431
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm46
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