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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
9
total RNA-seq
Assay category
88
DNA binding
9
Transcription
Target of assay
45
histone
45
histone modification
43
transcription factor
23
broad histone mark
22
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
43
November, 2017
25
August, 2017
25
February, 2018
2
December, 2017
2
November, 2018
Available data
97
bam
97
bigWig
97
fastq
85
bed narrowPeak
55
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
13
tagAlign
9
tsv
3
bed bed3+
Organism
97
Homo sapiens
Biosample type
45
cell line
25
in vitro differentiated cells
22
primary cell
5
tissue
Organ
47
liver
17
pancreas
14
epithelium
9
embryo
Project
97
AMP
Genome assembly (visualization)
117
hg19
97
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
11
inconsistent control read length
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
total RNA-seq
cell line
HepG2
45
in vitro differentiated cells
pancreatic endoderm
6
3
endocrine cell
2
2
definitive endodermal cell
2
1
embryonic stem cell
2
1
posterior foregut
2
1
+ See 1 more…
primary cell
skeletal muscle myoblast
8
pancreatic alpha cell
7
pancreatic beta cell
7
tissue
islet of Langerhans
3
liver
2
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