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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 293ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 3DNase-seq
Assay category
  • 293DNA binding
  • 163Transcription
  • 21DNA accessibility
Target of assay
  • 221transcription factor
  • 81recombinant protein
  • 69histone
  • 69histone modification
  • 38broad histone mark
  • 31narrow histone mark
  • 24RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1control
Date released
  • 142August, 2017
  • 126November, 2017
  • 72September, 2018
  • 45November, 2018
  • 27December, 2017
  • 25July, 2018
  • 14February, 2018
  • 9January, 2019
  • 7October, 2017
  • 5October, 2018
  • 3December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 477fastq
  • 476bam
  • 476bigWig
  • 282bed narrowPeak
  • 243bigBed narrowPeak
  • 163tsv
  • 14bed bed3+
  • 12bed broadPeak
  • 9tagAlign
  • 5bigBed broadPeak
Organism
  • 472Homo sapiens
Biosample type
  • 174cell line
  • 172tissue
  • 114primary cell
  • 17in vitro differentiated cells
Organ
  • 216pancreas
  • 201liver
  • 78epithelium
  • 20connective tissue
  • 15adipose tissue
  • 12blood
  • 12bodily fluid
  • 4brain
  • 4embryo
  • 3spleen
Project
  • 477AMP
Genome assembly (visualization)
  • 480hg19
  • 477GRCh38
Lab
  • 476AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 62missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

477 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
cell line
HepG21575
GM1287812
tissue
islet of Langerhans6891
liver381
white adipose tissue12
pancreas11
body of pancreas13
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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