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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 117ChIP-seq
  • 34single cell RNA-seq
  • 4WGBS
  • 2DNase-seq
  • 1ATAC-seq
Assay category
  • 117DNA binding
  • 34Transcription
  • 4DNA methylation
  • 3DNA accessibility
Target of assay
  • 56histone
  • 56histone modification
  • 55transcription factor
  • 33RNA binding protein
  • 30broad histone mark
  • 26narrow histone mark
  • 18chromatin remodeller
  • 5control
Date released
  • 46December, 2017
  • 22November, 2018
  • 21April, 2018
  • 17October, 2018
  • 16November, 2017
  • 11January, 2019
  • 11July, 2018
  • 9August, 2017
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1October, 2017
Available data
  • 158bam
  • 158fastq
  • 153bigWig
  • 109bed narrowPeak
  • 86bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bed broadPeak
  • 2bigBed broadPeak
Organism
  • 158Homo sapiens
Biosample type
  • 43in vitro differentiated cells
  • 41cell line
  • 37tissue
  • 34primary cell
  • 3stem cell
Organ
  • 53liver
  • 46pancreas
  • 42epithelium
  • 9blood
  • 9bodily fluid
  • 9embryo
  • 7connective tissue
  • 6spleen
  • 2adipose tissue
  • 2brain
Project
  • 158AMP
Genome assembly (visualization)
  • 158GRCh38
  • 154hg19
  • 5hg18
Lab
  • 158AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 10missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 6inconsistent control run_type
BIOSAMPLE
ASSAY

158 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
ATAC-seq
in vitro differentiated cells
hepatocyte14
pancreatic endoderm7
Posterior foregut5
adipocyte5
definitive endodermal cell5
cell line
HepG232
GM128789
tissue
body of pancreas17
spleen6
right lobe of liver5
adipose tissue2
liver11
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
mesenchymal cell4
stem cell
hESC3
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