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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1262total RNA-seq
  • 1159ChIP-seq
  • 226ATAC-seq
  • 207DNase-seq
  • 80single cell RNA-seq
  • 18small RNA-seq
  • 14WGBS
  • 2Hi-C
Assay category
  • 1360Transcription
  • 1159DNA binding
  • 433DNA accessibility
  • 14DNA methylation
  • 23D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • 410narrow histone mark
  • 392broad histone mark
  • 344transcription factor
  • 88recombinant protein
  • 82RNA binding protein
  • 31chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 276May, 2021
  • 245November, 2017
  • 238August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 156July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 75December, 2017
  • 72September, 2018
  • 64April, 2019
  • 64November, 2018
  • 57November, 2019
  • 40May, 2024
  • 35February, 2023
  • 34October, 2018
  • 32April, 2018
  • 18January, 2019
  • 16February, 2018
  • 16March, 2020
  • 12May, 2023
  • 8October, 2017
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3September, 2020
  • 2December, 2018
  • 2June, 2018
  • 2March, 2019
  • 1March, 2023
Available data
  • 2800bam
  • 2771bigWig
  • 1524bed narrowPeak
  • 1359tsv
  • 896bigBed narrowPeak
  • 792fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 256bed bed3+
  • 246tagAlign
  • 64xls
  • 14bed bedMethyl
  • 14bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2962Homo sapiens
Biosample type
  • 1823tissue
  • 510primary cell
  • 382cell line
  • 250in vitro differentiated cells
  • 3stem cell
Organ
  • 604pancreas
  • 550connective tissue
  • 489liver
  • 408adipose tissue
  • 276epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 53musculature of body
  • 31nerve
  • 25embryo
  • 18ureter
  • 12spleen
  • 12vein
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2771AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 3039hg19
  • 2968GRCh38
  • 5hg18
Lab
  • 2659AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 196inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 72missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
files.read_length!
  • 100
BIOSAMPLE
ASSAY

2968 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue3821
islet of Langerhans260252216
liver1477521
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell107138
pancreatic beta cell107108
pancreatic acinar cell48511
pancreatic ductal cell41347
cell line
HepG2522211
smooth muscle cell of the coronary artery5248
EndoC_BH133131
GM1287811
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
hepatocyte14
stem cell
hESC3
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