Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1256ChIP-seq
  • 1154total RNA-seq
  • 234ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 16WGBS
  • 2Hi-C
Assay category
  • 1278Transcription
  • 1256DNA binding
  • 441DNA accessibility
  • 16DNA methylation
  • 23D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • 438transcription factor
  • 410narrow histone mark
  • 392broad histone mark
  • 99RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 278November, 2017
  • 276May, 2021
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 157August, 2017
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 77December, 2017
  • 74November, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 35February, 2023
  • 29December, 2018
  • 26January, 2019
  • 25February, 2018
  • 16March, 2020
  • 14October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2825bam
  • 2796bigWig
  • 1625bed narrowPeak
  • 1277tsv
  • 991bigBed narrowPeak
  • 817fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2987Homo sapiens
Biosample type
  • 1766tissue
  • 508primary cell
  • 457cell line
  • 259in vitro differentiated cells
  • 3stem cell
Organ
  • 563connective tissue
  • 528liver
  • 517pancreas
  • 421adipose tissue
  • 266epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 53musculature of body
  • 50blood
  • 50bodily fluid
  • 31nerve
  • 28embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2796AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 3079hg19
  • 2993GRCh38
  • 5hg18
Lab
  • 2684AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 196inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 76missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
files.read_length!
  • 101
BIOSAMPLE
ASSAY

2993 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue13822
islet of Langerhans251712216
liver7514721
kidney207513
bone tissue58
primary cell
monocyte845313
pancreatic alpha cell71312
pancreatic beta cell71012
pancreatic ductal cell13410
pancreatic acinar cell8512
cell line
HepG2258511
smooth muscle cell of the coronary artery4528
GM1287850
EndoC_BH113331
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte4841
neural progenitor cell13710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm133
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego