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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 1086ChIP-seq
  • 234ATAC-seq
  • 197DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 1086DNA binding
  • 431DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 713histone modification
  • 712histone
  • 366narrow histone mark
  • 366transcription factor
  • 345broad histone mark
  • 88recombinant protein
  • 81RNA binding protein
  • 19chromatin remodeller
  • 5control
  • 3other context
  • 3other post-translational modification
Date released
  • 568February, 2021
  • 276May, 2021
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 202August, 2017
  • 198November, 2017
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 72September, 2018
  • 64April, 2019
  • 63November, 2018
  • 57November, 2019
  • 54December, 2017
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 35February, 2023
  • 30December, 2018
  • 26January, 2019
  • 17February, 2018
  • 16March, 2020
  • 12May, 2023
  • 8October, 2017
  • 7August, 2020
  • 6November, 2020
  • 5December, 2019
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1March, 2023
Available data
  • 2769bam
  • 2747bigWig
  • 1450bed narrowPeak
  • 1400tsv
  • 868bigBed narrowPeak
  • 761fastq
  • 221bed bed3+
  • 214tagAlign
  • 201bed broadPeak
  • 195bigBed broadPeak
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2937Homo sapiens
Biosample type
  • 1817tissue
  • 507primary cell
  • 381cell line
  • 231in vitro differentiated cells
  • 1stem cell
Organ
  • 601pancreas
  • 563connective tissue
  • 441liver
  • 422adipose tissue
  • 278epithelium
  • 266heart
  • 205kidney
  • 203brain
  • 187vasculature
  • 185blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 31nerve
  • 18ureter
  • 16embryo
  • 15spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2740AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2987hg19
  • 2937GRCh38
  • 5hg18
Lab
  • 2628AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 194inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 69missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 1inconsistent assembly
files.read_length!
  • 36
BIOSAMPLE
ASSAY

2937 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue3822
islet of Langerhans260112216
liver147711
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1021312
pancreatic beta cell1021012
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2517811
smooth muscle cell of the coronary artery5248
GM1287854
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte448
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
hepatocyte14
stem cell
hESC1
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