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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1272total RNA-seq
  • 1181ChIP-seq
  • 225ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1396Transcription
  • 1181DNA binding
  • 432DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 789histone modification
  • 788histone
  • 407narrow histone mark
  • 380broad histone mark
  • 378transcription factor
  • 99RNA binding protein
  • 76recombinant protein
  • 31chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 276May, 2021
  • 254November, 2017
  • 231August, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 75November, 2018
  • 72September, 2018
  • 64April, 2019
  • 57November, 2019
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 39December, 2017
  • 35February, 2023
  • 31February, 2018
  • 30December, 2018
  • 19January, 2019
  • 16March, 2020
  • 13October, 2017
  • 12May, 2023
  • 7August, 2020
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 2September, 2017
  • 1March, 2023
Available data
  • 2860bam
  • 2831bigWig
  • 1541bed narrowPeak
  • 1395tsv
  • 923bigBed narrowPeak
  • 852fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 247bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 3022Homo sapiens
Biosample type
  • 1815tissue
  • 528primary cell
  • 431cell line
  • 253in vitro differentiated cells
  • 1stem cell
Organ
  • 622pancreas
  • 561connective tissue
  • 464liver
  • 422adipose tissue
  • 286epithelium
  • 266heart
  • 216brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 53musculature of body
  • 52blood
  • 52bodily fluid
  • 31nerve
  • 26embryo
  • 18ureter
  • 16spleen
  • 12vein
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2831AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 3109hg19
  • 3028GRCh38
Lab
  • 2719AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 196inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 77missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
files.read_length!
  • 50
BIOSAMPLE
ASSAY

3028 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260242216
liver1473921
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071012
pancreatic beta cell107712
pancreatic ductal cell413410
pancreatic acinar cell48312
cell line
HepG223511
smooth muscle cell of the coronary artery5248
GM1287852
EndoC_BH133131
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4451
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
hepatocyte14
stem cell
hESC1
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