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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 1096ChIP-seq
  • 224ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 1096DNA binding
  • 431DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 738histone modification
  • 737histone
  • 381narrow histone mark
  • 355broad histone mark
  • 344transcription factor
  • 88RNA binding protein
  • 23chromatin remodeller
  • 19recombinant protein
  • 12control
  • 2other context
  • 2other post-translational modification
Date released
  • 568February, 2021
  • 276May, 2021
  • 218August, 2017
  • 211November, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 164July, 2018
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 72September, 2018
  • 64April, 2019
  • 58December, 2017
  • 58November, 2018
  • 57November, 2019
  • 49April, 2018
  • 40May, 2024
  • 35February, 2023
  • 31February, 2018
  • 30October, 2018
  • 28December, 2018
  • 16March, 2020
  • 15January, 2019
  • 14October, 2017
  • 12May, 2023
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 2March, 2019
  • 1March, 2023
Available data
  • 2789bam
  • 2750bigWig
  • 1462bed narrowPeak
  • 1400tsv
  • 858bigBed narrowPeak
  • 771fastq
  • 282bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2941Homo sapiens
Biosample type
  • 1828tissue
  • 525primary cell
  • 370cell line
  • 221in vitro differentiated cells
  • 3stem cell
Organ
  • 608pancreas
  • 536connective tissue
  • 427liver
  • 424adipose tissue
  • 270epithelium
  • 266heart
  • 217brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 53musculature of body
  • 45blood
  • 45bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 12vein
  • 8skeleton
  • 7spleen
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2760AMP
  • 186T1D
  • 1ITG
Genome assembly (visualization)
  • 3046hg19
  • 2947GRCh38
  • 5hg18
Lab
  • 2648AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 196inconsistent ontology term
  • 27inconsistent control
  • 1inconsistent replicate
Audit category:
  • 78missing controlled_by
Audit category:
  • 48inconsistent control read length
  • 6inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

2947 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260252216
liver1477521
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic beta cell107712
pancreatic alpha cell107612
pancreatic ductal cell413410
pancreatic acinar cell48512
cell line
HepG2517611
smooth muscle cell of the coronary artery5248
EndoC_BH133131
GM1287845
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
neural progenitor cell71310
adipocyte4181
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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