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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1153total RNA-seq
  • 1146ChIP-seq
  • 198DNase-seq
  • 193ATAC-seq
  • 90single cell RNA-seq
  • 18small RNA-seq
  • 12WGBS
  • 2Hi-C
Assay category
  • 1261Transcription
  • 1146DNA binding
  • 391DNA accessibility
  • 12DNA methylation
  • 23D chromatin structure
Target of assay
  • 794histone
  • 794histone modification
  • 404narrow histone mark
  • 389broad histone mark
  • 341transcription factor
  • 88recombinant protein
  • 80RNA binding protein
  • 25chromatin remodeller
  • 12control
  • 2other context
  • 2other post-translational modification
Date released
  • 568February, 2021
  • 276May, 2021
  • 242November, 2017
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 155July, 2018
  • 144August, 2017
  • 105August, 2021
  • 96May, 2019
  • 79July, 2019
  • 75December, 2017
  • 64April, 2019
  • 57November, 2019
  • 45November, 2018
  • 42April, 2018
  • 40May, 2024
  • 35February, 2023
  • 32October, 2018
  • 32September, 2018
  • 31February, 2018
  • 16March, 2020
  • 13January, 2019
  • 12May, 2023
  • 7October, 2017
  • 6November, 2020
  • 5December, 2019
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
  • 2March, 2019
  • 2September, 2017
  • 1March, 2023
Available data
  • 2655bam
  • 2615bigWig
  • 1473bed narrowPeak
  • 1260tsv
  • 854bigBed narrowPeak
  • 636fastq
  • 272bed broadPeak
  • 258bigBed broadPeak
  • 250bed bed3+
  • 246tagAlign
  • 64xls
  • 12bed bedMethyl
  • 12bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2806Homo sapiens
Biosample type
  • 1717tissue
  • 459primary cell
  • 369cell line
  • 264in vitro differentiated cells
  • 3stem cell
Organ
  • 557connective tissue
  • 464liver
  • 456pancreas
  • 416adipose tissue
  • 266heart
  • 223epithelium
  • 216brain
  • 205kidney
  • 191vasculature
  • 187blood vessel
  • 128artery
  • 96limb
  • 66bone element
  • 53musculature of body
  • 31nerve
  • 29embryo
  • 18ureter
  • 12vein
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 6eye
  • 6spleen
  • 1pericardium
  • 1pituitary gland
Project
  • 2625AMP
  • 186T1D
  • 1ITG
Genome assembly (visualization)
  • 2892hg19
  • 2812GRCh38
  • 5hg18
Lab
  • 2514AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 196inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 74missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 3inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

2812 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans169251216
liver147661
kidney201375
bone tissue58
primary cell
monocyte538413
pancreatic endocrine cell23
pancreatic ductal cell138
pancreatic acinar cell810
pancreatic beta cell710
cell line
HepG22151
smooth muscle cell of the coronary artery5248
EndoC_BH133131
GM1287811
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte448
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm413
stem cell
hESC3
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