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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1262total RNA-seq
  • 732ChIP-seq
  • 233ATAC-seq
  • 205DNase-seq
  • 23single cell RNA-seq
  • 18small RNA-seq
  • 13WGBS
  • 2Hi-C
Assay category
  • 1303Transcription
  • 732DNA binding
  • 438DNA accessibility
  • 13DNA methylation
  • 23D chromatin structure
Target of assay
  • 586histone modification
  • 585histone
  • 306narrow histone mark
  • 279broad histone mark
  • 143transcription factor
  • 38RNA binding protein
  • 9chromatin remodeller
  • 7recombinant protein
  • 3control
  • 3other context
  • 3other post-translational modification
Date released
  • 568February, 2021
  • 276May, 2021
  • 210June, 2019
  • 207May, 2020
  • 207October, 2019
  • 122July, 2018
  • 105August, 2021
  • 104August, 2017
  • 96May, 2019
  • 94November, 2017
  • 79July, 2019
  • 64April, 2019
  • 57November, 2019
  • 40May, 2024
  • 40September, 2018
  • 35February, 2023
  • 34November, 2018
  • 29October, 2018
  • 28December, 2018
  • 16March, 2020
  • 13January, 2019
  • 12April, 2018
  • 12May, 2023
  • 7August, 2020
  • 7October, 2017
  • 6November, 2020
  • 5December, 2019
  • 5September, 2017
  • 3September, 2020
  • 2December, 2017
  • 2March, 2019
  • 1August, 2018
  • 1June, 2018
  • 1March, 2023
Available data
  • 2320bam
  • 2300bigWig
  • 1302tsv
  • 1143bed narrowPeak
  • 650bigBed narrowPeak
  • 312fastq
  • 214tagAlign
  • 210bed broadPeak
  • 207bed bed3+
  • 204bigBed broadPeak
  • 64xls
  • 13bed bedMethyl
  • 13bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2488Homo sapiens
Biosample type
  • 1721tissue
  • 382primary cell
  • 237cell line
  • 148in vitro differentiated cells
Organ
  • 500connective tissue
  • 456pancreas
  • 409adipose tissue
  • 266heart
  • 254liver
  • 205kidney
  • 203brain
  • 187vasculature
  • 185blood vessel
  • 183epithelium
  • 128artery
  • 96limb
  • 66bone element
  • 53musculature of body
  • 43blood
  • 43bodily fluid
  • 31nerve
  • 18ureter
  • 12vein
  • 10embryo
  • 10spleen
  • 8skeleton
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2291AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2522hg19
  • 2488GRCh38
Lab
  • 2179AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 187inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 4missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 6inconsistent control run_type
  • 1inconsistent assembly
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

2488 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue382
islet of Langerhans260222
liver1473321
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell10132
pancreatic beta cell10102
pancreatic acinar cell455
endothelial cell of umbilical vein102
cell line
smooth muscle cell of the coronary artery5248
HepG254511
EndoC_BH133131
GM1287843
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
induced pluripotent stem cell9
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
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