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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 124total RNA-seq
  • 120ChIP-seq
  • 41ATAC-seq
  • 16single cell RNA-seq
  • 9DNase-seq
  • 5WGBS
Assay category
  • 140Transcription
  • 120DNA binding
  • 50DNA accessibility
  • 5DNA methylation
Target of assay
  • 107transcription factor
  • 20RNA binding protein
  • 10histone modification
  • 9chromatin remodeller
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 105August, 2017
  • 40September, 2018
  • 38November, 2017
  • 34November, 2018
  • 28December, 2018
  • 15October, 2018
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5September, 2017
  • 3September, 2020
  • 2December, 2017
  • 1August, 2018
  • 1June, 2018
Available data
  • 315bigWig
  • 315fastq
  • 304bam
  • 159bed narrowPeak
  • 144bigBed narrowPeak
  • 140tsv
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 8bed bed3+
  • 5bed bedMethyl
  • 5bigBed bedMethyl
Organism
  • 315Homo sapiens
Biosample type
  • 142tissue
  • 95cell line
  • 77primary cell
  • 1in vitro differentiated cells
Organ
  • 179pancreas
  • 71epithelium
  • 67liver
  • 43blood
  • 43bodily fluid
  • 10spleen
  • 9connective tissue
  • 8adipose tissue
  • 1brain
Project
  • 305AMP
  • 10HPAP
Genome assembly (visualization)
  • 321hg19
  • 315GRCh38
Lab
  • 304AMP-T2D consortium
  • 10Klaus Kaestner, Upenn
  • 1Stephen Parker, UMich
Audit category:
  • 5missing controlled_by
Audit category:
  • 7inconsistent control read length
  • 7inconsistent control run_type
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

315 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
tissue
islet of Langerhans911
body of pancreas8422
liver92
spleen6112
omental fat pad311
cell line
HepG25461
GM1287843
primary cell
pancreatic alpha cell10133
pancreatic beta cell10102
pancreatic acinar cell452
pancreatic ductal cell442
pancreatic cell3
in vitro differentiated cells
adipocyte1
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