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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 534ChIP-seq
  • 83single cell RNA-seq
  • 15total RNA-seq
  • 4WGBS
  • 2DNase-seq
  • 1ATAC-seq
Assay category
  • 534DNA binding
  • 98Transcription
  • 4DNA methylation
  • 3DNA accessibility
Target of assay
  • 305transcription factor
  • 218histone
  • 218histone modification
  • 113broad histone mark
  • 104narrow histone mark
  • 81recombinant protein
  • 62RNA binding protein
  • 25chromatin remodeller
  • 9control
  • 2other context
  • 2other post-translational modification
Date released
  • 186November, 2017
  • 145August, 2017
  • 75December, 2017
  • 45November, 2018
  • 42July, 2018
  • 37April, 2018
  • 32September, 2018
  • 31February, 2018
  • 18October, 2018
  • 13January, 2019
  • 7October, 2017
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
  • 2September, 2017
Available data
  • 639bam
  • 639fastq
  • 630bigWig
  • 489bed narrowPeak
  • 348bigBed narrowPeak
  • 98tsv
  • 72bed broadPeak
  • 63bigBed broadPeak
  • 51bed bed3+
  • 32tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 633Homo sapiens
Biosample type
  • 227cell line
  • 154primary cell
  • 138tissue
  • 117in vitro differentiated cells
  • 3stem cell
Organ
  • 277liver
  • 179pancreas
  • 111epithelium
  • 66connective tissue
  • 19embryo
  • 15adipose tissue
  • 14brain
  • 11blood
  • 11bodily fluid
  • 6spleen
  • 4vasculature
  • 2blood vessel
Project
  • 639AMP
Genome assembly (visualization)
  • 691hg19
  • 639GRCh38
  • 5hg18
Lab
  • 639AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 9inconsistent ontology term
Audit category:
  • 75missing controlled_by
Audit category:
  • 46inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

639 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
ATAC-seq
cell line
HepG2216
GM1287811
primary cell
pancreatic endocrine cell23
pancreatic ductal cell137
pancreatic alpha cell710
pancreatic beta cell710
pancreatic acinar cell87
tissue
liver42
islet of Langerhans2361
body of pancreas17
pancreas132
white adipose tissue12
in vitro differentiated cells
adipocyte48
pancreatic endoderm134
hepatocyte14
definitive endodermal cell72
primitive gut cell72
stem cell
hESC3
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