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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
96
total RNA-seq
3
ATAC-seq
1
Hi-C
Assay category
124
DNA binding
96
Transcription
3
DNA accessibility
1
3D chromatin structure
Target of assay
119
histone
119
histone modification
64
broad histone mark
55
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
135
May, 2021
45
May, 2020
40
May, 2024
2
March, 2019
1
March, 2023
1
October, 2017
Available data
221
bigWig
180
bam
124
bed narrowPeak
96
tsv
84
tagAlign
1
bed broadPeak
1
fastq
1
hic
Organism
224
Homo sapiens
Biosample type
181
primary cell
43
tissue
Organ
40
heart
3
pancreas
Project
180
T1D
43
AMP
1
ITG
Genome assembly (visualization)
284
hg19
224
GRCh38
Lab
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
Katalin Susztak, Upenn
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
224 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
primary cell
monocyte
84
53
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
tissue
left cardiac atrium
40
islet of Langerhans
3
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