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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
358
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
41
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
other post-translational modification
1
control
Date released
215
November, 2017
162
May, 2020
52
November, 2018
50
December, 2017
19
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
529
bam
526
bigWig
365
bed narrowPeak
341
fastq
324
bigBed narrowPeak
162
tsv
48
bed broadPeak
48
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
529
Homo sapiens
Biosample type
266
cell line
238
tissue
14
in vitro differentiated cells
11
primary cell
Organ
634
pancreas
566
connective tissue
529
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
13
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
529
AMP
Genome assembly (visualization)
623
hg19
529
GRCh38
Lab
529
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
lab.title!
Stephen Parker, UMich
Struan F.A. Grant, CHOP
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
529 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
259
5
1
1
tissue
liver
75
147
2
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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